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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006194.1_430_525_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
430 - 525
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCACCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
AAATCCCAAATT
Flanking Amino Acid:
ENQAQGVCPESEATYRCATD
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
64.8
0.33
0.8
57.2
26.6
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
49.8
0.07
2
69.47
41.2

Associated Gene:

Gene:
P2RX3
Ensembl Gene ID:
ENSAPLG00000019311
Chromosome:
PEDO01006194.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035127
27 - 2171
2145
ENSAPLT00000034083
101 - 2380
2280
ENSAPLT00000017949
27 - 1980
1954
ENSAPLT00000042475
53 - 1980
1928