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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006194.1_948_1057_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
948 - 1057
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
GTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
TGTCCCCTGTCC
Flanking Amino Acid:
SVRFPLFGFEKANLPPQASA
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
69.4
35.6
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
68
0.41
0.8
58.1
33.2
Minor 5ss
29.3
-2.4
3.1
34.7
35.3
Minor BPS
40.7
-0.7
3.6
65.34
40

Associated Gene:

Gene:
P2RX3
Ensembl Gene ID:
ENSAPLG00000019311
Chromosome:
PEDO01006194.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042475
53 - 1980
1928
ENSAPLT00000035127
27 - 2171
2145
ENSAPLT00000034083
101 - 2380
2280
ENSAPLT00000017949
27 - 1980
1954