Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006197.1_1268_1890_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1268 - 1890

Intron Length:

623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTGGGTTTAATC

Flanking Amino Acid:

FIMHIFKHAQPALLYLVPAC

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

71.4

40.3

Major BPS

81.8

0.79

1.1

34.5

Major PPT

79.3

0.66

0.9

76.7

31.9

Minor 5ss

35.1

-1.7

3.1

48.4

47.3

Minor BPS

54.3

0.11

1.9

65.12

41.8

Associated Gene:

Gene:

HM13

Ensembl Gene ID:

ENSAPLG00000014289

Chromosome:

PEDO01006197.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040902

205 - 6685

6481

ENSAPLT00000037889

21 - 6894

6874

ENSAPLT00000025558

758 - 6870

6113

ENSAPLT00000014908

303 - 6685

6383