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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006197.1_3367_3656_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3367 - 3656

Intron Length:

290

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTGAGTAGA

5'SS Class:

major

3'SS Sequence:

TCTCTGCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

TGGTGCTGAGCT

Flanking Amino Acid:

VAKSFEAPIKLVFPQDLLEK

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.6

1.3

74.1

38.4

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

82.6

0.73

0.8

76.5

32.1

Minor 5ss

-2.2

2.6

32.5

Minor BPS

48.2

-0

2.1

69.77

46.6

Associated Gene:

Gene:

HM13

Ensembl Gene ID:

ENSAPLG00000014289

Chromosome:

PEDO01006197.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040902

205 - 6685

6481

ENSAPLT00000037889

21 - 6894

6874

ENSAPLT00000025558

758 - 6870

6113

ENSAPLT00000014908

303 - 6685

6383