About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006197.1_5578_6186_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5578 - 6186
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTCTCTTTTATT
Flanking Amino Acid:
FTQGSGESKEEIVNYEFDTK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.7
85.1
27.9
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
61.9
0.45
1.6
75.01
42.5

Associated Gene:

Gene:
HM13
Ensembl Gene ID:
ENSAPLG00000014289
Chromosome:
PEDO01006197.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014908
303 - 6685
6383
ENSAPLT00000040902
205 - 6685
6481
ENSAPLT00000037889
21 - 6894
6874
ENSAPLT00000025558
758 - 6870
6113