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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_101568_106899_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101568 - 106899
Intron Length:
5332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
KAPGFEREDQNHLSVFSVVN
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.7
0.76
0.9
81
35.4
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034262
76687 - 124840
48154