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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_10594_11709_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10594 - 11709
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCATACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAAAAAT
Flanking Amino Acid:
LAEEGVLEEAEFYN
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
67.4
0.39
1
60.5
40.2
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
48.8
-0
2.2
79.82
41.4

Associated Gene:

Gene:
KCTD5
Ensembl Gene ID:
ENSAPLG00000001530
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019268
10581 - 23767
13187