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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_11802_12817_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11802 - 12817
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTCTTCCTAAAG
Flanking Amino Acid:
IRERDSKISQVPVKHVYRVL
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.1
0.63
1
79.2
27
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
55.4
0.03
1.9
64.91
42.8

Associated Gene:

Gene:
KCTD5
Ensembl Gene ID:
ENSAPLG00000001530
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019268
10581 - 23767
13187