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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_119484_119820_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119484 - 119820
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAC
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
GTSASSHNSLGLNGVTGSIW
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
61.5
0.29
1
58.7
38.1
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034262
76687 - 124840
48154
ENSAPLT00000026935
76687 - 123444
46758
ENSAPLT00000016894
75149 - 123432
48284
ENSAPLT00000037300
76687 - 125317
48631