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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_121093_123276_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121093 - 123276
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AACCATCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCATTTTCACT
Flanking Amino Acid:
LHLDLGTVDEVIFQLQSKKC
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70
0.45
0.9
61.4
38.9
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
56.3
0.28
1.8
75.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037300
76687 - 125317
48631
ENSAPLT00000034262
76687 - 124840
48154
ENSAPLT00000026935
76687 - 123444
46758
ENSAPLT00000016894
75149 - 123432
48284