About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_46798_52275_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46798 - 52275
Intron Length:
5478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TCTACCTTAACT
Flanking Amino Acid:
WECAIPGKKGTPWEGGLFKL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
81.6
0.71
0.8
76.5
31.5
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
85
1.18
1.1
92.89
35.6

Associated Gene:

Gene:
UBE2I
Ensembl Gene ID:
ENSAPLG00000016117
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016818
46429 - 57522
11094