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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_54374_57458_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54374 - 57458
Intron Length:
3085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CAAGCTTTAATT
Flanking Amino Acid:
PAQAEAYTIYCQNRVEYEKR
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.9
0.81
0.8
85.1
28.5
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
62.2
0.46
1.4
69.35
42.2

Associated Gene:

Gene:
UBE2I
Ensembl Gene ID:
ENSAPLG00000016117
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016818
46429 - 57522
11094