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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_77114_79047_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77114 - 79047
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TTTCCTAAATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCCTAAATC
Flanking Amino Acid:
SADRAADALYRRRRPIRRRD
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
69.7
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
72.2
0.5
1
72.1
36.8
Minor 5ss
37
-1.5
3
45.5
35.6
Minor BPS
73
0.7
1.6
80.61
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026935
76687 - 123444
46758