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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_79155_83331_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79155 - 83331
Intron Length:
4177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTCTACTGTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AATGCTTTAACT
Flanking Amino Acid:
ETTGICPDGDDCAYLHRTTG
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
69.9
41.1
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
73.6
0.53
0.9
68.8
36.9
Minor 5ss
35.7
-1.6
3.3
45.7
43.5
Minor BPS
74.6
0.85
1.3
83.43
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026935
76687 - 123444
46758
ENSAPLT00000016894
75149 - 123432
48284
ENSAPLT00000037300
76687 - 125317
48631
ENSAPLT00000034262
76687 - 124840
48154