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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_86675_88609_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86675 - 88609
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTTA
5'SS Class:
major
3'SS Sequence:
GACCTGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
KILSEDPRWQDTTFVLAGYK
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
68.5
38.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72
0.5
1
64
41.4
Minor 5ss
39.9
-1.1
3.3
47.2
48.3
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037300
76687 - 125317
48631
ENSAPLT00000034262
76687 - 124840
48154
ENSAPLT00000026935
76687 - 123444
46758
ENSAPLT00000016894
75149 - 123432
48284