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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_88746_89489_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88746 - 89489
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TCATTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCATTTTTTATA
Flanking Amino Acid:
RRRNPRKFRYRSTPCPNVKH
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
84
0.77
0.7
80
31.8
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
54.2
0.12
1.6
62.67
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026935
76687 - 123444
46758
ENSAPLT00000016894
75149 - 123432
48284
ENSAPLT00000037300
76687 - 125317
48631
ENSAPLT00000034262
76687 - 124840
48154