Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_92141_94911_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

92141 - 94911

Intron Length:

2771

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

ATTCCTTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTAAT

U12 Branch Point Sequence:

ATTCCTTCAACA

Flanking Amino Acid:

GPFCAFAHVEEDTMNVVILQ

Intron Amino Acid Position:

312

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.4

1.09

0.7

Major BPS

66.7

0.41

1.4

69.7

44.2

Major PPT

74.9

0.56

0.9

70.3

34.4

Minor 5ss

35.1

-1.7

2.7

41.5

45.1

Minor BPS

66.6

0.52

1.5

75.85

34.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016186

Chromosome:

PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026935

76687 - 123444

46758

ENSAPLT00000016894

75149 - 123432

48284

ENSAPLT00000037300

76687 - 125317

48631

ENSAPLT00000034262

76687 - 124840

48154