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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006204.1_95067_106899_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95067 - 106899
Intron Length:
11833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
ITNNSGQSGNNHLSVFSVVN
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.7
0.76
0.9
81
35.4
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016186
Chromosome:
PEDO01006204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026935
76687 - 123444
46758