Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006226.1_1727_2098_F

Intron Information:

Intron Rank:

142412

Intron Class:

major

Intron Phase:

Intron Coordinates:

1727 - 2098

Intron Length:

372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGAGCG

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTCAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTTCCTCAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.3

56.1

41.5

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

0.7

80.3

32.2

Minor 5ss

32.3

-2

3.1

39.7

45.8

Minor BPS

47.9

-0.3

2.2

64.91

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026705

Chromosome:

PEDO01006226.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018692

1371 - 3616

2246