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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006246.1_4275_4438_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4275 - 4438

Intron Length:

164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGCCA

5'SS Class:

major

3'SS Sequence:

GTGGGCGCCGCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GACCCAA

U12 Branch Point Sequence:

GGGACCCAACCT

Flanking Amino Acid:

VRELKIAFREFDMNGDGEIS

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

63.4

42.7

Major BPS

45.1

-0.3

1.3

50.4

36.7

Major PPT

55.5

0.13

46.6

41.5

Minor 5ss

-2.3

3.4

39.7

45.8

Minor BPS

40.5

-0.6

2.1

46.1

Associated Gene:

Gene:

CABP4

Ensembl Gene ID:

ENSAPLG00000026880

Chromosome:

PEDO01006246.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033887

3784 - 6666

2883

ENSAPLT00000022012

3784 - 5794

2011