Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006246.1_4945_5438_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4945 - 5438

Intron Length:

494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGGGCA

5'SS Class:

major

3'SS Sequence:

CACCCCGGTCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCACAC

U12 Branch Point Sequence:

CCCCCCTGCACC

Flanking Amino Acid:

SPFLNTVFGKERELSPEELD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

62.9

37.3

Major BPS

47.2

-0.1

52.2

32.7

Major PPT

59.5

0.22

49.4

38.9

Minor 5ss

-3.1

3.4

29.8

43.2

Minor BPS

46.3

-0.3

1.9

52.11

45.1

Associated Gene:

Gene:

CABP4

Ensembl Gene ID:

ENSAPLG00000026880

Chromosome:

PEDO01006246.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033887

3784 - 6666

2883

ENSAPLT00000022012

3784 - 5794

2011