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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006270.1_1176_1270_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1176 - 1270
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGTGTC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCCCCCCCCACA
Flanking Amino Acid:
GDKKPEALEPAPNGPLEVAA
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
66.8
39.3
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
67.6
0.4
0.7
60.1
22.4
Minor 5ss
30.3
-2.3
3.4
34.4
42
Minor BPS
39.7
-0.8
2.1
45.3
43.7

Associated Gene:

Gene:
STRN4
Ensembl Gene ID:
ENSAPLG00000021534
Chromosome:
PEDO01006270.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028210
21 - 4857
4837
ENSAPLT00000026234
21 - 4857
4837
ENSAPLT00000019591
21 - 4857
4837
ENSAPLT00000029121
21 - 4857
4837