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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006270.1_1350_1438_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1350 - 1438
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
CCCCCCCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAAAAA
U12 Branch Point Sequence:
GGGCCCTAAAAA
Flanking Amino Acid:
AWKEGRQLLRQYLEEVGYSD
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1
65.5
40.2
Major BPS
49.6
-0
1.1
57.3
34.4
Major PPT
75.1
0.56
0.8
67.5
26
Minor 5ss
32.8
-2
2.7
40.5
39
Minor BPS
48.6
-0.1
1.8
56.01
42.3

Associated Gene:

Gene:
STRN4
Ensembl Gene ID:
ENSAPLG00000021534
Chromosome:
PEDO01006270.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029121
21 - 4857
4837
ENSAPLT00000028210
21 - 4857
4837
ENSAPLT00000026234
21 - 4857
4837
ENSAPLT00000019591
21 - 4857
4837