Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006270.1_1869_1961_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1869 - 1961

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGCCTC

5'SS Class:

strong_major

3'SS Sequence:

CCCTTTGTCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

GTGCCCTAAAAC

Flanking Amino Acid:

PRQHKKQRVKLPPKPLLPEV

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.9

81.1

36.1

Major BPS

68.9

0.47

59.2

39.1

Major PPT

76.1

0.59

0.8

71.2

33.1

Minor 5ss

32.1

-2

4.1

50.1

46.5

Minor BPS

51.9

0.04

1.8

62.11

42.7

Associated Gene:

Gene:

STRN4

Ensembl Gene ID:

ENSAPLG00000021534

Chromosome:

PEDO01006270.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029121

21 - 4857

4837

ENSAPLT00000028210

21 - 4857

4837

ENSAPLT00000026234

21 - 4857

4837

ENSAPLT00000019591

21 - 4857

4837