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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006270.1_3068_3183_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3068 - 3183
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGGTGCT
5'SS Class:
major
3'SS Sequence:
TTCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
WNLQKTVAAKKNAALDVEPV
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
68.6
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.1
0.63
0.7
73
25.2
Minor 5ss
30.2
-2.3
3.5
40.8
39.8
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
STRN4
Ensembl Gene ID:
ENSAPLG00000021534
Chromosome:
PEDO01006270.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028210
21 - 4857
4837
ENSAPLT00000026234
21 - 4857
4837
ENSAPLT00000019591
21 - 4857
4837
ENSAPLT00000029121
21 - 4857
4837