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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006270.1_3232_3325_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3232 - 3325
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGTT
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCCACCATGACC
Flanking Amino Acid:
VEPVYAFRGHRGPVLAVAMG
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73
38.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
67.9
0.4
0.8
62
28.8
Minor 5ss
28.3
-2.5
3.9
45.4
49.7
Minor BPS
54.1
0.11
1.7
63.57
42.1

Associated Gene:

Gene:
STRN4
Ensembl Gene ID:
ENSAPLG00000021534
Chromosome:
PEDO01006270.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029121
21 - 4857
4837
ENSAPLT00000028210
21 - 4857
4837
ENSAPLT00000026234
21 - 4857
4837
ENSAPLT00000019591
21 - 4857
4837