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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006270.1_988_1101_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
988 - 1101
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTGTCCCCC
Flanking Amino Acid:
KMLEYALKQERSKYHKLKFG
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86.6
0.82
0.7
79.3
32.7
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
32.8
-1.3
3.8
61.43
44.4

Associated Gene:

Gene:
STRN4
Ensembl Gene ID:
ENSAPLG00000021534
Chromosome:
PEDO01006270.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028210
21 - 4857
4837
ENSAPLT00000026234
21 - 4857
4837
ENSAPLT00000019591
21 - 4857
4837
ENSAPLT00000029121
21 - 4857
4837