Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006314.1_4043_4441_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4043 - 4441

Intron Length:

399

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAA|GCAAATACA

5'SS Class:

major

3'SS Sequence:

CCCCTTTCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACACAT

U12 Branch Point Sequence:

TCCTCCCTAACA

Flanking Amino Acid:

GTAAAVGKMKSKLTSVSLRG

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.2

75.4

33.7

Major BPS

61.1

0.28

29.8

Major PPT

76.4

0.59

0.7

71.5

26.5

Minor 5ss

26.8

-2.7

3.7

34.4

34.9

Minor BPS

68.6

0.58

1.7

75.88

41.5

Associated Gene:

Gene:

SNX17

Ensembl Gene ID:

ENSAPLG00000006053

Chromosome:

PEDO01006314.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006312

3923 - 7303

3381