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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006314.1_6790_7237_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6790 - 7237
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGAG
5'SS Class:
major
3'SS Sequence:
CTCTTGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
AAGTCATCACCT
Flanking Amino Acid:
TSDQTEDVLEAVASKLDLPD
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.2
40.6
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
78.7
0.65
0.8
76.2
32.4
Minor 5ss
22
-3.2
3.4
27.8
44.2
Minor BPS
46.7
-0.1
2
65.39
44.5

Associated Gene:

Gene:
SNX17
Ensembl Gene ID:
ENSAPLG00000006053
Chromosome:
PEDO01006314.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006312
3923 - 7303
3381