Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006325.1_14082_14695_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14082 - 14695

Intron Length:

614

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACCGCTT

5'SS Class:

weak_major

3'SS Sequence:

GCTCCGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCGAAT

U12 Branch Point Sequence:

ATTCTCCGAATT

Flanking Amino Acid:

DVWQLSSSLKRFDDKYTLKL

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.4

0.2

1.3

55.8

48.4

Major BPS

0.17

1.4

65.8

39.5

Major PPT

65.5

0.35

0.9

57.7

33.2

Minor 5ss

41.6

-0.9

3.7

46.3

Minor BPS

50.7

0.1

1.8

73.51

36.9

Associated Gene:

Gene:

SPCS2

Ensembl Gene ID:

ENSAPLG00000006232

Chromosome:

PEDO01006325.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006466

10105 - 14911

4807

ENSAPLT00000041439

9123 - 14911

5789

ENSAPLT00000019180

9123 - 14911

5789