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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006325.1_9643_10104_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9643 - 10104
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAATTC
5'SS Class:
major
3'SS Sequence:
TCCTCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAG
U12 Branch Point Sequence:
CTTCCTTTAAGC
Flanking Amino Acid:
FTPSTRKHKPASALSAARSP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1
65.5
35
Major BPS
63.3
0.33
1.6
73.3
39.1
Major PPT
77.6
0.62
0.7
72
26.3
Minor 5ss
35.3
-1.7
3.4
50
46.5
Minor BPS
63.7
0.41
1.7
71.26
40.4

Associated Gene:

Gene:
SPCS2
Ensembl Gene ID:
ENSAPLG00000006232
Chromosome:
PEDO01006325.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019180
9123 - 14911
5789