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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006329.1_1548_1624_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1548 - 1624
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCGCAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
GGAACCTGATTT
Flanking Amino Acid:
MKHPGVLEGARGDRPGD
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
70
0.5
1
59.3
39.1
Major PPT
48.1
-0.1
1.7
53.5
41.6
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
47.3
-0.1
1.7
60.7
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023497
Chromosome:
PEDO01006329.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025608
129 - 1770
1642