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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006332.1_1348_1949_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1348 - 1949
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCTGGCAGG
5'SS Class:
weak_major
3'SS Sequence:
TCATCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
GLPYKMGILV
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.4
49.7
46.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
82
0.72
0.8
80.9
30.8
Minor 5ss
23
-3.1
3.7
23.4
37.1
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025579
Chromosome:
PEDO01006332.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043472
1206 - 1951
746