Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006348.1_2992_4009_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2992 - 4009

Intron Length:

1018

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAC|GCGGGGACA

5'SS Class:

weak_major

3'SS Sequence:

CGGGGTGAATCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGGTGAA

U12 Branch Point Sequence:

GCGGGGTGAATC

Flanking Amino Acid:

HDCELRCGGHCLRLILAALT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.07

1.9

61.9

36.8

Major BPS

45.7

-0.2

1.4

34.8

43.8

Major PPT

-0

1.1

43.7

45.8

Minor 5ss

16.8

-3.8

3.7

21.1

29.3

Minor BPS

36.1

-1

2.3

38.88

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019798

Chromosome:

PEDO01006348.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046514

2431 - 4054

1624