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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006349.1_1721_1858_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1721 - 1858
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
CCGCGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
GGAGAGGTGACG
Flanking Amino Acid:
RTVPMALAKQSSGKLEKAEI
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
64.1
41.8
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
71.9
0.49
0.9
64.5
36.5
Minor 5ss
35.3
-1.7
3.6
49.7
46.9
Minor BPS
32.3
-1.5
2.5
33.45
40.1

Associated Gene:

Gene:
HELT
Ensembl Gene ID:
ENSAPLG00000029435
Chromosome:
PEDO01006349.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031537
1408 - 2571
1164