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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006365.1_938_1166_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
938 - 1166
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAC
U12 Branch Point Sequence:
TTCTCCCCAGCA
Flanking Amino Acid:
ARTIHLTFVPDEEVGGHKGM
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.5
Major BPS
47.4
-0.1
1
50.7
32.1
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
35.6
-1.6
2.9
43.1
37.8
Minor BPS
48.9
-0
2.1
68.63
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023077
Chromosome:
PEDO01006365.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036126
639 - 1371
733