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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006373.1_609_875_F

Intron Information:

Intron Rank:
131000
Intron Class:
major
Intron Phase:
Intron Coordinates:
609 - 875
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.9
36.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
34.8
-1.7
3.4
48.2
47.5
Minor BPS
62.5
0.47
1.6
74.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020369
Chromosome:
PEDO01006373.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026647
24 - 1498
1475