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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006393.1_1086_1622_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1086 - 1622
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCCC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GGCTTCCAAACT
Flanking Amino Acid:
GSLIKLTSKQPVGFVTFDSR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
60.8
44.2
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
84.4
0.77
0.8
77.9
36.6
Minor 5ss
40
-1.1
3
54.6
42.5
Minor BPS
47.8
-0
2
65.65
44.7

Associated Gene:

Gene:
RBPMS2
Ensembl Gene ID:
ENSAPLG00000004799
Chromosome:
PEDO01006393.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027785
21 - 13970
13950