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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006393.1_2634_13572_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2634 - 13572
Intron Length:
10939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAGCT
5'SS Class:
major
3'SS Sequence:
ACCTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATTGACC
Flanking Amino Acid:
TNGGGNVEEEVRTLFVSGLP
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
68.6
36.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
69.8
0.45
0.8
61.8
34.2
Minor 5ss
26.2
-2.7
3.5
38.7
46.6
Minor BPS
65.6
0.47
1.6
73.43
37.4

Associated Gene:

Gene:
RBPMS2
Ensembl Gene ID:
ENSAPLG00000004799
Chromosome:
PEDO01006393.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027785
21 - 13970
13950