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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_10353_10996_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10353 - 10996
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATTTACAACT
Flanking Amino Acid:
LKNAIRVDEKIYHPSCYEDY
Intron Amino Acid Position:
1390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.8
40.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
43.3
-0.7
2.9
56.8
47.3
Minor BPS
48.1
-0
1.7
65.61
38.5

Associated Gene:

Gene:
PCF11
Ensembl Gene ID:
ENSAPLG00000012231
Chromosome:
PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012748
616 - 11935
11320