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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_11033_11625_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11033 - 11625

Intron Length:

593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CATTATTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

GCTACATTAACA

Flanking Amino Acid:

HPSCYEDYQNTSSFDCTPSP

Intron Amino Acid Position:

1402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

79.7

28.2

Major BPS

84.6

0.86

41.2

Major PPT

82.8

0.74

0.9

76.8

36.6

Minor 5ss

34.4

-1.8

3.3

44.6

43.6

Minor BPS

63.2

0.41

1.7

70.48

41.1

Associated Gene:

Gene:

PCF11

Ensembl Gene ID:

ENSAPLG00000012231

Chromosome:

PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012748

616 - 11935

11320