Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_16462_18012_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16462 - 18012

Intron Length:

1551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTTATTAAG

5'SS Class:

weak_major

3'SS Sequence:

AAATGTGAAACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

TTTGTCAGAAAC

Flanking Amino Acid:

MPHFTMSSPASENG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.3

0.1

1.2

56.9

41.7

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

51.1

0.03

1.1

44.3

Minor 5ss

33.7

-1.9

2.5

41.1

38.7

Minor BPS

47.7

-0.1

1.9

65.27

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029279

Chromosome:

PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030116

15821 - 18025

2205