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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_16835_18417_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16835 - 18417
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTGAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
AGTTAAATAACA
Flanking Amino Acid:
HCAAHSGSLECLHWLLWHGA
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
69.8
0.45
1.1
66.3
44
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
48.8
-0.1
2
66.63
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024544
Chromosome:
PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022971
15473 - 20194
4722