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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_18959_19578_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18959 - 19578
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGACTT
5'SS Class:
major
3'SS Sequence:
GTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATGAATTAACC
Flanking Amino Acid:
TLQTILQSGANANVSDRNDW
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.9
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
32.9
-1.9
3.3
49.3
46.4
Minor BPS
51.5
0.03
1.9
64.65
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024544
Chromosome:
PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022971
15473 - 20194
4722