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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_2578_2667_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2578 - 2667
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
CTTTATGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TAAACTTCAACT
Flanking Amino Acid:
SASKRELLKKANDRLASGEI
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
82.2
0.72
0.9
75.8
37.8
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
61.6
0.44
1.6
75.58
40.5

Associated Gene:

Gene:
PCF11
Ensembl Gene ID:
ENSAPLG00000012231
Chromosome:
PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012748
616 - 11935
11320