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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_3311_3392_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3311 - 3392
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTATAT
U12 Branch Point Sequence:
GGGTGGTTATAT
Flanking Amino Acid:
REERQLLGQAGVREEPRSPF
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
61.5
0.29
1.3
61
45.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
38.7
-0.7
2.5
54.48
46.6

Associated Gene:

Gene:
PCF11
Ensembl Gene ID:
ENSAPLG00000012231
Chromosome:
PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012748
616 - 11935
11320