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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_4835_6142_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4835 - 6142
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTTACTTTTACA
Flanking Amino Acid:
FNSMAVGSNQVSLMSAQLGP
Intron Amino Acid Position:
1141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
89.2
0.88
0.7
83.8
31
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
68.6
0.58
1.6
80.14
35.3

Associated Gene:

Gene:
PCF11
Ensembl Gene ID:
ENSAPLG00000012231
Chromosome:
PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012748
616 - 11935
11320