Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006398.1_7814_8455_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7814 - 8455

Intron Length:

642

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGCGTATA

5'SS Class:

major

3'SS Sequence:

CCCCTTTTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATAAAGA

Flanking Amino Acid:

LTNFAVEELRQRYDSVINRL

Intron Amino Acid Position:

1245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.1

68.4

38.3

Major BPS

100

1.24

0.5

100

Major PPT

79.7

0.67

0.7

75.5

26.5

Minor 5ss

-1.7

3.1

47.1

42.6

Minor BPS

55.5

0.17

2.2

76.36

40.9

Associated Gene:

Gene:

PCF11

Ensembl Gene ID:

ENSAPLG00000012231

Chromosome:

PEDO01006398.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012748

616 - 11935

11320