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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006415.1_1352_1960_F

Intron Information:

Intron Rank:
132250
Intron Class:
major
Intron Phase:
Intron Coordinates:
1352 - 1960
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTCT
5'SS Class:
major
3'SS Sequence:
CCCATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTTTCTCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.5
36.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.8
0.56
0.8
72.7
32
Minor 5ss
41.8
-0.9
3
60.1
44.2
Minor BPS
47
-0.2
1.9
57.67
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021052
Chromosome:
PEDO01006415.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042798
21 - 2652
2632