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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006418.1_10048_10178_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10048 - 10178
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
ACTGCCCCCAGT
Flanking Amino Acid:
LDSVRQIAEKDKHALLDITP
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
66.5
0.37
0.9
57.2
38.6
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
37.6
-0.8
2.3
54.77
46.9

Associated Gene:

Gene:
TJP3
Ensembl Gene ID:
ENSAPLG00000004428
Chromosome:
PEDO01006418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039056
8886 - 14722
5837
ENSAPLT00000028371
8886 - 14722
5837
ENSAPLT00000004583
8619 - 14750
6132
ENSAPLT00000040988
8619 - 14750
6132